Sample |
Total reads |
Average read length (bp) |
Total yield (bp) |
Target regions (bp) |
Average throughput depth of target regions (X) |
Initial mappable reads |
Initial mappable reads (%) |
Non-redundant reads |
Non-redundant reads (%) |
On-target reads |
On-target reads (%) |
On-target Yield (bp) |
Mean depth of target regions (X) |
Show Description
- · Total reads : Total Number of Reads.
- · Average read length(bp) : Average length of reads after trimming.
- · Total yield(bp) : Total number of bases sequenced.
- · Target regions(bp) : Target region size.
- · Average throughput depth of target regions(X) : {Total yield} / {Target regions}.
- · Initial mappable reads : Number of reads mapped to reference.
- · Initial mappable reads(%) : 100 * { Initial mappable reads} / {Total reads}.
- · Non-redundant reads : Number of de-duplicate reads from Picard tools.
- · Non-redundant reads(%) : 100 * {Non-redundant reads } / { Initial mappable reads}.
- · On-target reads : Number of reads mapped to target regions.
- · On-target reads(%) : 100 * {On-target reads} / {Non-redundant reads}.
- · On-target Yield(bp) : The sum of the bases in the final alignment to the target regions.
- · Mean depth of target regions(X) : {On-target yield} / {Target regions}.
Sample |
Number of on-target genotypes (>=1X) |
% Coverage of target regions (>=1X) |
Number of on-target genotypes (>=10X) |
% Coverage of target regions (>=10X) |
Number of on-target genotypes (>=20X) |
% Coverage of target regions (>=20X) |
Number of on-target genotypes (>=30X) |
% Coverage of target regions (>=30X) |
Number of on-target genotypes (>=50X) |
% Coverage of target regions (>=50X) |
Show Description
- · % Coverage : The percentage of bases in target regions with a depth of coverage or greater.
Sample |
Fragment length median |
Standard deviation |